OBO Foundry dashboard analysis¶

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/tmp/ipykernel_26377/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    179
RDF/XML             3
OWL/XML Syntax      2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 184 152344.168478 808920.274732 52.0 1532.25 7193.5 32072.50 9974927.0
Declaration 184 28763.532609 188169.992351 5.0 450.50 1265.0 5373.75 2438882.0
SubClassOf 179 38442.021739 214111.636526 0.0 355.25 1589.5 6767.75 2438853.0
EquivalentClasses 128 2674.967391 13604.610970 0.0 0.00 25.0 211.50 126605.0
SubAnnotationPropertyOf 117 9.130435 20.330718 0.0 0.00 2.0 7.00 162.0
TransitiveObjectProperty 116 6.255435 11.067353 0.0 0.00 2.0 6.00 69.0
SubObjectPropertyOf 103 41.793478 97.015749 0.0 0.00 2.0 38.50 674.0
DisjointClasses 95 30.630435 101.076254 0.0 0.00 1.0 21.00 848.0
ObjectPropertyRange 85 14.516304 26.735494 0.0 0.00 0.0 19.00 142.0
ObjectPropertyDomain 85 14.766304 27.552330 0.0 0.00 0.0 18.25 148.0
InverseObjectProperties 82 9.201087 17.855149 0.0 0.00 0.0 12.25 113.0
SubPropertyChainOf 65 9.516304 26.118682 0.0 0.00 0.0 2.00 149.0
ClassAssertion 64 79.923913 476.259371 0.0 0.00 0.0 18.00 5528.0
FunctionalObjectProperty 49 0.820652 1.700340 0.0 0.00 0.0 1.00 9.0
SymmetricObjectProperty 48 1.646739 8.494948 0.0 0.00 0.0 1.00 81.0
DataPropertyRange 44 1.108696 3.134356 0.0 0.00 0.0 0.00 30.0
DataPropertyDomain 39 1.048913 3.148909 0.0 0.00 0.0 0.00 32.0
IrrefexiveObjectProperty 37 0.608696 2.318642 0.0 0.00 0.0 0.00 26.0
DifferentIndividuals 34 0.809783 6.069877 0.0 0.00 0.0 0.00 82.0
AnnotationPropertyRangeOf 34 1.423913 10.558433 0.0 0.00 0.0 0.00 139.0
SubDataPropertyOf 30 0.847826 3.583309 0.0 0.00 0.0 0.00 33.0
EquivalentObjectProperties 29 1.429348 5.481754 0.0 0.00 0.0 0.00 36.0
FunctionalDataProperty 25 0.489130 1.525697 0.0 0.00 0.0 0.00 11.0
InverseFunctionalObjectProperty 22 0.173913 0.555326 0.0 0.00 0.0 0.00 4.0
AsymmetricObjectProperty 21 0.510870 2.508977 0.0 0.00 0.0 0.00 26.0
Rule 20 1.690217 5.739967 0.0 0.00 0.0 0.00 29.0
DisjointObjectProperties 15 0.233696 1.142691 0.0 0.00 0.0 0.00 10.0
ObjectPropertyAssertion 14 12.456522 101.683847 0.0 0.00 0.0 0.00 1024.0
ReflexiveObjectProperty 12 0.108696 0.489374 0.0 0.00 0.0 0.00 4.0
AnnotationPropertyDomain 10 0.266304 1.616092 0.0 0.00 0.0 0.00 17.0
DisjointUnion 7 0.086957 0.556181 0.0 0.00 0.0 0.00 5.0
DataPropertyAssertion 5 0.179348 1.601027 0.0 0.00 0.0 0.00 20.0
DatatypeDefinition 2 0.108696 1.402235 0.0 0.00 0.0 0.00 19.0
SameIndividual 1 0.005435 0.073721 0.0 0.00 0.0 0.00 1.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 183 117737.331522 630660.725491 0.0 1439.75 5807.5 21225.25 7316561.0
ObjectSomeValuesFrom 163 17100.891304 87110.690286 0.0 35.00 454.5 2880.25 853209.0
ObjectIntersectionOf 123 4152.467391 20238.144369 0.0 0.00 32.5 408.75 203016.0
ObjectUnionOf 88 27.543478 89.148849 0.0 0.00 0.0 16.00 767.0
ObjectAllValuesFrom 73 31.717391 153.352362 0.0 0.00 0.0 9.50 1764.0
ObjectComplementOf 63 14.288043 86.588460 0.0 0.00 0.0 2.00 1088.0
ObjectMinCardinality 62 2.472826 8.206310 0.0 0.00 0.0 1.00 57.0
ObjectExactCardinality 48 9.831522 88.509200 0.0 0.00 0.0 1.00 1193.0
ObjectOneOf 45 3.679348 28.190810 0.0 0.00 0.0 0.00 273.0
DataMinCardinality 27 0.255435 0.697359 0.0 0.00 0.0 0.00 4.0
DataSomeValuesFrom 23 6.934783 64.280006 0.0 0.00 0.0 0.00 859.0
DataExactCardinality 23 0.548913 1.645593 0.0 0.00 0.0 0.00 7.0
ObjectHasValue 21 224.891304 1926.674189 0.0 0.00 0.0 0.00 21288.0
ObjectMaxCardinality 19 0.809783 4.486983 0.0 0.00 0.0 0.00 41.0
DataHasValue 18 119.722826 1569.219393 0.0 0.00 0.0 0.00 21288.0
ObjectHasSelf 16 0.228261 0.959317 0.0 0.00 0.0 0.00 6.0
DataAllValuesFrom 3 0.103261 1.027060 0.0 0.00 0.0 0.00 13.0
DataMaxCardinality 2 0.010870 0.103972 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.964 0.956 0.973
150 ro 0.799 0.844 0.755
8 bfo 0.786 0.778 0.793
132 pato 0.714 0.956 0.473
64 go 0.705 0.904 0.505
110 obi 0.686 0.949 0.424
20 cl 0.621 0.949 0.293
102 ncbitaxon 0.607 0.822 0.391
166 uberon 0.588 0.800 0.375
44 envo 0.564 0.942 0.185
144 pr 0.549 0.853 0.245
35 doid 0.539 0.949 0.130
14 chebi 0.533 0.631 0.435
94 mondo 0.499 0.949 0.049
69 hp 0.498 0.867 0.130
139 plana 0.494 0.978 0.011
175 wbphenotype 0.494 0.978 0.011
174 wbls 0.494 0.978 0.011
113 ogms 0.486 0.727 0.245
40 eco 0.477 0.949 0.005
36 dpo 0.474 0.949 0.000
128 opl 0.472 0.927 0.016
96 mp 0.469 0.889 0.049
163 trans 0.466 0.904 0.027
111 obib 0.466 0.904 0.027
63 gno 0.466 0.927 0.005
160 symp 0.466 0.882 0.049
122 omrse 0.465 0.838 0.092
42 ecto 0.464 0.911 0.016
108 oba 0.458 0.889 0.027
46 eupath 0.453 0.889 0.016
134 pco 0.451 0.793 0.109
52 fbdv 0.449 0.882 0.016
138 phipo 0.447 0.882 0.011
26 colao 0.445 0.889 0.000
133 pcl 0.445 0.889 0.000
11 caro 0.445 0.667 0.223
80 lepao 0.445 0.889 0.000
181 zfa 0.442 0.867 0.016
50 fbbt 0.442 0.867 0.016
172 vto 0.441 0.882 0.000
51 fbcv 0.441 0.860 0.022
99 mro 0.441 0.882 0.000
73 iao 0.438 0.876 0.000
32 ddpheno 0.436 0.867 0.005
173 wbbt 0.435 0.860 0.011
17 chmo 0.435 0.816 0.054
13 cdno 0.433 0.867 0.000
169 vbo 0.433 0.867 0.000
125 ontoavida 0.430 0.860 0.000
183 zp 0.427 0.844 0.011
41 ecocore 0.427 0.844 0.011
2 aism 0.427 0.838 0.016
25 cob 0.422 0.822 0.022
152 rxno 0.421 0.838 0.005
95 mop 0.421 0.816 0.027
66 hancestro 0.416 0.816 0.016
58 fypo 0.413 0.822 0.005
140 planp 0.413 0.822 0.005
9 bspo 0.412 0.727 0.098
180 zeco 0.411 0.822 0.000
59 gecko 0.410 0.816 0.005
0 ado 0.408 0.816 0.000
179 xpo 0.403 0.800 0.005
7 bco 0.399 0.793 0.005
141 po 0.398 0.698 0.098
37 dron 0.395 0.704 0.087
75 ico 0.394 0.749 0.038
117 ohpi 0.394 0.787 0.000
38 duo 0.390 0.764 0.016
149 rbo 0.388 0.771 0.005
162 to 0.388 0.771 0.005
101 nbo 0.387 0.653 0.120
146 psdo 0.382 0.764 0.000
47 exo 0.380 0.733 0.027
56 foodon 0.373 0.660 0.087
61 geno 0.371 0.727 0.016
70 hsapdv 0.369 0.711 0.027
76 ido 0.368 0.616 0.120
57 fovt 0.366 0.733 0.000
45 epio 0.363 0.727 0.000
145 proco 0.363 0.727 0.000
21 clao 0.360 0.720 0.000
103 ncit 0.359 0.593 0.125
127 oostt 0.357 0.704 0.011
136 pdumdv 0.355 0.711 0.000
39 ecao 0.355 0.711 0.000
158 stato 0.354 0.622 0.087
43 emapa 0.354 0.704 0.005
177 xco 0.349 0.682 0.016
10 bto 0.347 0.660 0.033
116 ohmi 0.347 0.689 0.005
130 ornaseq 0.344 0.689 0.000
92 mmusdv 0.344 0.689 0.000
34 disdriv 0.344 0.689 0.000
118 olatdv 0.344 0.689 0.000
27 cro 0.344 0.689 0.000
5 apollo_sv 0.339 0.587 0.092
135 pdro 0.338 0.653 0.022
60 genepio 0.338 0.638 0.038
167 uo 0.337 0.511 0.163
168 upheno 0.336 0.638 0.033
19 cio 0.334 0.667 0.000
16 chiro 0.334 0.667 0.000
4 apo 0.334 0.667 0.000
68 hom 0.334 0.667 0.000
78 kisao 0.334 0.667 0.000
15 cheminf 0.334 0.667 0.000
1 agro 0.333 0.660 0.005
159 swo 0.333 0.660 0.005
3 amphx 0.330 0.660 0.000
176 xao 0.330 0.644 0.016
48 fao 0.330 0.644 0.016
154 scdo 0.329 0.653 0.005
161 taxrank 0.328 0.644 0.011
143 ppo 0.327 0.653 0.000
79 labo 0.327 0.653 0.000
98 mpio 0.325 0.644 0.005
81 ma 0.322 0.644 0.000
28 cteno 0.322 0.644 0.000
156 so 0.321 0.467 0.174
71 hso 0.319 0.638 0.000
178 xlmod 0.319 0.638 0.000
31 ddanat 0.317 0.622 0.011
91 mmo 0.316 0.616 0.016
129 opmi 0.316 0.593 0.038
49 fbbi 0.316 0.631 0.000
12 cdao 0.314 0.622 0.005
182 zfs 0.314 0.622 0.005
30 cvdo 0.314 0.616 0.011
109 obcs 0.310 0.593 0.027
84 mf 0.308 0.578 0.038
55 fobi 0.308 0.616 0.000
89 miapa 0.308 0.616 0.000
82 maxo 0.307 0.593 0.022
62 geo 0.307 0.571 0.043
112 ogg 0.302 0.549 0.054
107 oarcs 0.300 0.600 0.000
97 mpath 0.300 0.556 0.043
106 oae 0.298 0.504 0.092
142 poro 0.296 0.593 0.000
67 hao 0.296 0.593 0.000
148 pw 0.290 0.564 0.016
23 clyh 0.289 0.578 0.000
83 mco 0.289 0.578 0.000
54 flopo 0.288 0.571 0.005
165 txpo 0.288 0.571 0.005
29 cto 0.288 0.571 0.005
119 omit 0.285 0.542 0.027
151 rs 0.284 0.564 0.005
115 ohd 0.282 0.564 0.000
147 pso 0.278 0.556 0.000
86 mfoem 0.277 0.549 0.005
65 gsso 0.275 0.527 0.022
137 peco 0.272 0.511 0.033
24 cmo 0.272 0.489 0.054
153 sbo 0.269 0.533 0.005
87 mfomd 0.267 0.511 0.022
88 mi 0.267 0.511 0.022
100 ms 0.266 0.520 0.011
171 vt 0.264 0.511 0.016
126 ontoneo 0.260 0.520 0.000
104 ncro 0.258 0.504 0.011
53 fideo 0.256 0.511 0.000
124 ons 0.256 0.489 0.022
164 tto 0.256 0.511 0.000
105 nomen 0.252 0.504 0.000
121 omp 0.245 0.467 0.022
6 aro 0.245 0.467 0.022
77 ino 0.241 0.460 0.022
18 cido 0.239 0.467 0.011
170 vo 0.238 0.393 0.082
155 sepio 0.236 0.467 0.005
85 mfmo 0.234 0.467 0.000
123 one 0.230 0.460 0.000
72 htn 0.230 0.460 0.000
74 iceo 0.230 0.460 0.000
93 mod 0.227 0.438 0.016
33 dideo 0.225 0.438 0.011
157 spd 0.219 0.438 0.000
22 clo 0.202 0.333 0.071
114 ogsf 0.197 0.393 0.000
131 ovae 0.197 0.393 0.000
90 micro 0.192 0.378 0.005

OBO Score Summary

count mean std min 25% 50% 75% max
score 184.0 0.373016 0.114267 0.192 0.30000 0.3455 0.435 0.964
score_dash 184.0 0.691848 0.155638 0.333 0.57625 0.6670 0.826 0.978
score_impact 184.0 0.054065 0.134522 0.000 0.00000 0.0110 0.033 0.973

OBO dependency graph